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Research Assistant

 

Job Description

Research Assistant – sample size investigation for clinical texts classification using NLP



A team in BHI is looking for a motivated research assistant to work on a project investigating optimal sample size for Natural Language Processing (NLP) classification tasks that require manual annotations. The tasks involve:



·       running simulations using deep learning models to investigate model performances in various language settings and training corpora sizes;



·       developing a GitHub project page and a well-documented code;



·       participating in dissemination activities (e.g. preparing and participating in an interactive online seminar).



A successful candidate can start as soon as possible and work till the end of July, in a collaboration with myself, Angus Roberts, Jaya Chaturvedi, and Daniel Stahl. The hours (14h/week) can be worked as two full days or spread over the week, remotely or in the office (Denmark Hill). Please write to diana.shamsutdinova@kcl.ac.uk to express your interest.



Project Description: Natural Language Processing methods are widely applied to extract information from clinical texts and present it in a structured way. However, unlike in statistical data analyses, there are no methods available for estimating the sample size needed. Our project aims to assess optimal sample size for the development of clinical NLP models and how these requirements change depending on the documents and language properties. By taking a simulation approach and following modern guidance on model validation, we will be able to investigate model performances in various scenarios and provide guidance on sample sizes for clinical NLP tasks.



Qualifications

The role is suitable for a current MSc/PhD student/postdoc/early career researcher in Computer science, Engineering, Health Informatics, Statistics, or a related field.



Skills

·       Strong analytical skills;



·       Knowledge of Python programming language;



·       Understanding model validation techniques such as cross-validation and evaluation metrics such as AUC-ROC/sensitivity/specificity/precision, 



·       Ability to work independently and in a team.

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We are seeking a junior developer to join our interdisciplinary team and to support programming projects primarily relating to the optimisation of myHealthE processes.



 



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The successful candidate will be someone who is motivated to improve child and adolescent mental health care. They will be positive and professional. The post requires someone with excellent interpersonal and communication skills and have an interest in how programming can enhance processes to improve patient outcomes.



Qualifications

 Grade 7 in computer science



Skills

1.           Strong IT skills and knowledge of the whole MS Office suite. 



2.           Excellent communication and interpersonal skills.



3.           Produces work with an eye to accuracy and excellent attention to detail.



4.           Enthusiasm and can-do attitude with a strong work ethic, using initiative and creativity to address challenges.



5.           The ability to apply programming skills to operational service challenges



6.           Assist with developing methods for harmonization and curation of health data from diverse data sources using establish open source solutions and standards



 


  • assisting in conducting research activities related to computer vision, including literature reviews, data collection, experimentation, and analysis

  • assisting in the development and implementation of computer vision algorithms, including image processing, object detection, recognition, segmentation, and tracking

  • preparing and annotating datasets for training and evaluation purposes, ensuring data quality and relevance to research objectives

  • contributing to the solution in a form of software tools and frameworks for computer vision research, using programming languages such as Python or C/C++

  • assisting in the analysis of qualitative and quantitative data, as directed.



Qualifications

N/A



Skills

  • Some prior experience and strong interest in the subject of Computer Vision

  • Understanding of deep learning frameworks (e.g., TensorFlow Keras, PyTorch) and some proficiency in training convolutional neural networks (CNNs) for computer vision tasks.

  • Familiarity in training deep learning models using preprocessed and augmented datasets, monitoring model performance and convergence during training.

  • Practical knowledge in utilizing programming languages relevant to machine learning, deep learning and computer vision (Python 3.4 and above is an absolute must).

  • Experience working with video / image data, including data preprocessing, annotation and analysis using popular libraries (e.g. OpenCV)

  • Knowledge of common evaluation metrics for assessing model performance in computer vision tasks, such as accuracy, precision, recall, and F1 score.

  • Knowledge in web frameworks written in Python (e.g. Flask) is desirable but not essential

Invigilator role for UG exams



Shift: 08:30 - 13:00 (4.5 hours, 15 minute paid break)



Location: Guy's Campus, New Hunts House G10




Qualifications

Current UG students should not apply



Skills

Invigilation experience

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